PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3039_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 390aa    MW: 44565.5 Da    PI: 8.2181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3039_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11224274154
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +r++h  +Er+RR+++N  ++ Lr+l+P++   +  + + a+i+  A++++k L
  RrC3039_p2 224 QRMTHITVERNRRRQMNVYLNSLRSLIPSS---YILRGDQASIVGGAIDFVKIL 274
                 79****************************...9***************99866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-14216284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.14E-10222279No hitNo description
Gene3DG3DSA:4.10.280.101.0E-11222279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.037223274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8224274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-9229280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
VKTQTNGSSH LHHHLLSINQ SPHNCLSSLP DKTATANNVV LRDLSSRERE IQTRVCDNRG  60
GFSDLFMEKI QGQNKLCSLN QKVIVRRSLE VQGSGEDQRF ELEEEDQFLQ KMQQSEDLSA  120
AVLPFKDPNF LALLSLQTLE KPPWGLGNYL PHEVPELSHS PNYYYQNPSL ERINEAMIST  180
QEEIQLNPQR KRRNNNLVAS SVSREKRKRK RTKPAKNTEE MESQRMTHIT VERNRRRQMN  240
VYLNSLRSLI PSSYILRGDQ ASIVGGAIDF VKILEQQLQS LEAQKITQQT DTKDVSLRAC  300
DEEQSSTKLR IDATVIESHV NLKIQCPKKQ GQLLRSIIWL EKLRLTVLHL NVTSPCNASV  360
SYSFNLKMED DCVLGSTDEI TAAVRQIFDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190210KRRNNNLVASSVSREKRKRKR
2206213RKRKRTKP
3224235RMTHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636160.10.0PREDICTED: transcription factor bHLH70 isoform X2
SwissprotO810371e-138BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A0D3BNQ41e-179A0A0D3BNQ4_BRAOL; Uncharacterized protein
STRINGBra004505.1-P1e-151(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-139bHLH family protein